Hmmm ok, well unfortunately I took it apart before I read this I so I guess I can't tell if that was the problem.
I am, however, unfortunate enough to have had the baseplate taken apart before (god knows why, they didn't even install bushings) and one of the screwholes is no longer a 3-48 sized hole. The threads are completely gone. Is it ok to resize it for a 4-40? Otherwise I'm kinda stuck.