That makes sense, I can see taking a fat emissions rod and cutting it down to make something more useful out of it.
Looking at the chart of rods, there's not much room left for improvement. Making a custom rod and trying to figure out if you have dialed it in would be extremely difficult though without the use of a dyno or a 1/4 mile of track.
The secondary rods have a limited usefulness in daily driving, unless you have all 10 toes located in the engine bay.
But I'm looking at it from my point of view, regular driving, I don't race, so I don't see a need for a custom rod.
If you race, I'm sure your point of view is much different.
I understand wanting to use your C&C machine, I had access to a mini mill for a while and it was fun using it to modify a carb base. I took one that had the enclosed idle screws and cut that part back to expose the screws and make it easier to adjust them.
Good luck with your project, I hope you are successful.
Rick